Signac: inter-range-methods – R documentation

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Signac

inter-range-methods

Inter-range transformations for ChromatinAssay objects

Description

The range, reduce, gaps, disjoin, isDisjoint, disjointBins methods are available for ChromatinAssay objects.

Usage

## S4 method for signature 'ChromatinAssay'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

## S4 method for signature 'Seurat'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

## S4 method for signature 'ChromatinAssay'
reduce(x, drop.empty.ranges = FALSE, ...)

## S4 method for signature 'Seurat'
reduce(x, drop.empty.ranges = FALSE, ...)

## S4 method for signature 'ChromatinAssay'
gaps(x, start = NA, end = NA)

## S4 method for signature 'Seurat'
gaps(x, start = NA, end = NA)

## S4 method for signature 'ChromatinAssay'
disjoin(x, ...)

## S4 method for signature 'Seurat'
disjoin(x, ...)

## S4 method for signature 'ChromatinAssay'
isDisjoint(x, ...)

## S4 method for signature 'Seurat'
isDisjoint(x, ...)

## S4 method for signature 'ChromatinAssay'
disjointBins(x, ...)

## S4 method for signature 'Seurat'
disjointBins(x, ...)

Arguments

`x`	A `ChromatinAssay` object
`...`	Additional arguments
`with.revmap`	See `inter-range-methods` in the IRanges packages
`na.rm`	Ignored
`drop.empty.ranges`	See `?IRanges{inter-range-methods}`
`start, end`	See `?IRanges{inter-range-methods}`

Functions

range,Seurat-method: method for Seurat objects
reduce,ChromatinAssay-method: method for ChromatinAssay objects
reduce,Seurat-method: method for Seurat objects
gaps,ChromatinAssay-method: method for ChromatinAssay objects
gaps,Seurat-method: method for Seurat objects
disjoin,ChromatinAssay-method: method for ChromatinAssay objects
disjoin,Seurat-method: method for Seurat objects
isDisjoint,ChromatinAssay-method: method for ChromatinAssay objects
isDisjoint,Seurat-method: method for Seurat objects
disjointBins,ChromatinAssay-method: method for ChromatinAssay objects
disjointBins,Seurat-method: method for Seurat objects