Load edges from edge list for single cell network
CID.LoadEdges loads edges, typically after running the SPRING pipeline.
CID.LoadEdges(data.dir)
data.dir |
A directory where "edges.csv" file is located |
The edge list in data frame format
## Not run: # Loads edges file.dir = "https://kleintools.hms.harvard.edu/tools/client_datasets/" file = "CITESEQ_EXPLORATORY_CITESEQ_5K_PBMCS/FullDataset_v1_protein/edges.csv" download.file(paste0(file.dir, file, "?raw=true"), destfile = "edges.csv") # data.dir is your path to the "edges.csv" file edges = CID.LoadEdges(data.dir = ".") ## End(Not run)
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