SignacX: CID.writeJSON – R documentation

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CID.writeJSON

Writes JSON file for SPRING integration

CID.writeJSON is a SPRING-integrated function for writing a JSON file.

CID.writeJSON(
  cr,
  json_new = "categorical_coloring_data.json",
  spring.dir,
  new_populations = NULL,
  new_colors = NULL
)

`cr`	output from `GenerateLabels`
`json_new`	Filename where annotations will be saved for new SPRING color tracks. Default is "categorical_coloring_data_new.json".
`spring.dir`	Directory where file 'categorical_coloring_data.json' is located. If set, will add Signac annotations to the file.
`new_populations`	Character vector specifying any new cell types that Signac has learned. Default is NULL.
`new_colors`	Character vector specifying the HEX color codes for new cell types. Default is NULL.

A categorical_coloring_data.json file with Signac annotations and Louvain clusters added.

Cell Type Identification and Discovery from Single Cell Gene Expression Data

v2.2.0

GPL-3

Authors

Mathew Chamberlain [aut, cre], Virginia Savova [aut], Richa Hanamsagar [aut], Frank Nestle [aut], Emanuele de Rinaldis [aut], Sanofi US [fnd]

Initial release

2021-02-24