Expands soup counts calculated at the cluster level to the cell level
Given a clustering of cells and soup counts calculated for each of those clusters, determines a most likely allocation of soup counts at the cell level.
expandClusters(clustSoupCnts, cellObsCnts, clusters, cellWeights, verbose = 1)
clustSoupCnts |
Matrix of genes (rows) by clusters (columns) where counts are number of soup counts for that gene/cluster combination. |
cellObsCnts |
Matrix of genes (rows) by cells (columns) giving the observed counts |
clusters |
Mapping from cells to clusters. |
cellWeights |
Weighting to give to each cell when distributing counts. This would usually be set to the number of expected soup counts for each cell. |
verbose |
Integer giving level of verbosity. 0 = silence, 1 = Basic information, 2 = Very chatty, 3 = Debug. |
A matrix of genes (rows) by cells (columns) giving the number of soup counts estimated for each cell. Non-integer values possible.
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