Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.

Single Cell mRNA Soup eXterminator

package-ubuntu-20.04-r-4.0.5#cran#SoupX-1.5.2

Creates progress bar that won't ruin log files and shows progress towards 100

<table summary="R argblock">
<tr valign="top">
<td><code>min</code></td>
<td>
Minimum value of parameter.
</td>
</tr>
<tr valign="top">
<td><code>max</code></td>
<td>
Maximum value of parameter.
</td>
</tr>
<tr valign="top">
<td><code>...</code></td>
<td>
Passed to <code><a href="../../utils/html/txtProgressBar.html">txtProgressBar</a></code>
</td>
</tr>
</table>

A txtProgressBar object to use updating progress.

package-ubuntu-20.04-r-4.0.5#cran#SoupX-1.5.2#docs#initProgBar

`min`	Minimum value of parameter.
`max`	Maximum value of parameter.
`...`	Passed to `txtProgressBar`

initProgBar

Description

Usage

Arguments

Value

SoupX

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