Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments.  Implements the method described in Young et al. (2018) <doi:10.1101/303727>.

Single Cell mRNA Soup eXterminator

package-ubuntu-20.04-r-4.0.5#cran#SoupX-1.5.2

<p>Calculates an expression profile by aggregating counts across all cells and plots this (on a log10 scale) against the expression profile of the soup.
</p>

<table summary="R argblock"><tr valign="top">
<td><code>sc</code></td>
<td>
<p>A SoupChannel object.</p>
</td>
</tr></table>

<p>A ggplot2 object containing the plot.
</p>

package-ubuntu-20.04-r-4.0.5#cran#SoupX-1.5.2#docs#plotSoupCorrelation

plotSoupCorrelation

Description

Usage

Arguments

Value

SoupX

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