Manually set contamination fraction
Manually specify the contamination fraction.
setContaminationFraction(sc, contFrac, forceAccept = FALSE)
sc |
A SoupChannel object. |
contFrac |
The contamination fraction. Either a constant, in which case the same value is used for all cells, or a named vector, in which case the value is set for each cell. |
forceAccept |
A warning or error is usually returned for extremely high contamination fractions. Setting this to TRUE will turn these into messages and proceed. |
A modified SoupChannel object for which the contamination (rho) has been set.
sc = load10X(system.file('extdata','toyData',package='SoupX'))
sc = setContaminationFraction(sc,0.1)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.