Manually set dimension reduction for a channel
Manually specify the dimension reduction
setDR(sc, DR, reductName = NULL)
sc |
A SoupChannel object. |
DR |
The dimension reduction coordinates (e.g., tSNE). This must be a data.frame, with two columns giving the two dimension reduction coordinates. The data.frame must either have row names matching the row names of sc$metaData, or be ordered in the same order as sc$metaData. |
reductName |
What to name the reduction (defaults to column names provided). |
A modified SoupChannel object for which the dimension reduction has been set.
sc = load10X(system.file('extdata','toyData',package='SoupX'))
mDat = read.table(system.file('extdata','toyData','metaData.tsv',package='SoupX'),sep='\t')
sc = setDR(sc,mDat[,c('tSNE_1','tSNE_2')])Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.