StAMPP: potato – R documentation

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potato

Example genotype input format

Description

A data frame containing Solcap potato genotype data in tetraploid and diploid format as an small example of the input format required by StAMPP

Usage

data(potato)

Format

A data frame with 30 rows and 48 variables:

Sample: Sample names
Pop: Population name
Ploidy: Ploidy level
Format: Format of genotype data
solcap_snp_c1_1: genotype data
solcap_snp_c1_1000: genotype data
solcap_snp_c1_10000: genotype data
solcap_snp_c1_10001: genotype data
solcap_snp_c1_10011: genotype data
solcap_snp_c1_10012: genotype data
solcap_snp_c1_10031: genotype data
solcap_snp_c1_10042: genotype data
solcap_snp_c1_10050: genotype data
solcap_snp_c1_10054: genotype data
solcap_snp_c1_10109: genotype data
solcap_snp_c1_10130: genotype data
solcap_snp_c1_10157: genotype data
solcap_snp_c1_10202: genotype data
solcap_snp_c1_10252: genotype data
solcap_snp_c1_10253: genotype data
solcap_snp_c1_10255: genotype data
solcap_snp_c1_1029: genotype data
solcap_snp_c1_10295: genotype data
solcap_snp_c1_10297: genotype data
solcap_snp_c1_10351: genotype data
solcap_snp_c1_10384: genotype data
solcap_snp_c1_10397: genotype data
solcap_snp_c1_10457: genotype data
solcap_snp_c1_10491: genotype data
solcap_snp_c1_10492: genotype data
solcap_snp_c1_10494: genotype data
solcap_snp_c1_10579: genotype data
solcap_snp_c1_10646: genotype data
solcap_snp_c1_10669: genotype data
solcap_snp_c1_10715: genotype data
solcap_snp_c1_10737: genotype data
solcap_snp_c1_10743: genotype data
solcap_snp_c1_10762: genotype data
solcap_snp_c1_10855: genotype data
solcap_snp_c1_10873: genotype data
solcap_snp_c1_10879: genotype data
solcap_snp_c1_10900: genotype data
solcap_snp_c1_10932: genotype data
solcap_snp_c1_1094: genotype data
solcap_snp_c1_11137: genotype data
solcap_snp_c1_11144: genotype data
solcap_snp_c1_11196: genotype data
solcap_snp_c1_11206: genotype data

Source

The example genotype data is a subset of data from the publically avaliable Solcap potato dataset http://solcap.msu.edu/potato_infinium.shtml which was re-scored in GenomeStudio in diploid and tetraploid formats

StAMPP

Statistical Analysis of Mixed Ploidy Populations

v1.6.2

GPL-3

Authors

LW Pembleton

Initial release

2021-04-22