Search for the first occurrence of a given element in a sequence
Returns a vector containing the position of the first occurrence of the given element in each of the sequences in the data set.
seqfpos(seqdata, state)
seqdata |
a sequence object (see |
state |
the state element to search in the sequences |
the state to search for has to be passed as a character string, and must be one of the state returned by the alphabet
function. If the state is not contained in a sequence, NA is returned for this sequence.
Alexis Gabadinho
data(biofam) biofam.seq <- seqdef(biofam,10:25) ## Searching for the first occurrence of state 1 ## in each of the 5 first sequence of the biofam data set. seqfpos(biofam.seq[1:5,],"1")
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