TreeTools: CompatibleSplits – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

CompatibleSplits

Which splits are compatible?

Which splits are compatible?

CompatibleSplits(splits, splits2)

.CompatibleSplit(a, b, nTip)

.CompatibleRaws(rawA, rawB, bitmask)

`splits`	An object of class `Splits`.
`splits2`	A second `Splits` object.
`a, b`	Raw representations of splits, from a row of a `Splits` object.
`rawA, rawB`	Raw representations of splits.
`bitmask`	Raw masking bits that do not correspond to tips.

CompatibleSplits returns a logical matrix specifying whether each split in splits is compatible with each split in splits2.

.CompatibleSplit returns a logical vector stating whether splits are compatible.

.CompatibleRaws returns a logical vector specifying whether input raws are compatible.

splits <- as.Splits(BalancedTree(8))
splits2 <- as.Splits(PectinateTree(8))

summary(splits)
summary(splits2)

CompatibleSplits(splits, splits2)

Create, Modify and Analyse Phylogenetic Trees

v1.4.4

GPL (>= 3)

Authors

Martin R. Smith [aut, cre, cph] (<https://orcid.org/0000-0001-5660-1727>), Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>)

Initial release