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MatrixToPhyDat

Convert between matrices and phyDat objects

Description

MatrixToPhyDat() converts a matrix of tokens to a phyDat object; PhyDatToMatrix() converts a phyDat object to a matrix of tokens.

Usage

MatrixToPhyDat(tokens)

PhyDatToMatrix(dataset)

Arguments

tokens

matrix of tokens, probably created with ReadCharacters() or ReadTntCharacters(). Row names should correspond to tip labels; column names may optionally correspond to character labels.
dataset

A dataset of class phyDat.

Value

MatrixToPhyDat() returns an object of class phyDat.

PhyDatToMatrix() returns a matrix corresponding to the uncompressed character states within a phyDat object.

Author(s)

Martin R. Smith (martin.smith@durham.ac.uk)

See Also

Other phylogenetic matrix conversion functions: StringToPhyDat()

TreeTools

Create, Modify and Analyse Phylogenetic Trees

v1.4.4
GPL (>= 3)
Authors
Martin R. Smith [aut, cre, cph] (<https://orcid.org/0000-0001-5660-1727>), Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>)
Initial release

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