TreeTools: NJTree – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

NJTree

Generate a neighbour joining tree

NJTree() generates a rooted neighbour joining tree from a phylogenetic dataset.

NJTree(dataset, edgeLengths = FALSE)

`dataset`	A phylogenetic data matrix of class `phyDat`, whose names correspond to the labels of any accompanying tree.
`edgeLengths`	Logical specifying whether to include edge lengths.

NJTree returns an object of class phylo.

data('Lobo')
NJTree(Lobo.phy)

Create, Modify and Analyse Phylogenetic Trees

v1.4.4

GPL (>= 3)

Authors

Martin R. Smith [aut, cre, cph] (<https://orcid.org/0000-0001-5660-1727>), Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>)

Initial release