Extract a subtree
Subtree() safely extracts a clade from a phylogenetic tree.
Subtree(tree, node)
Modified from the ape function extract.clade, which
sometimes behaves erratically.
Unlike extract.clade, this function supports the extraction of 'clades'
that constitute a single tip.
Subtree() returns a tree of class phylo that represents a
clade extracted from the original tree.
Martin R. Smith (martin.smith@durham.ac.uk)
Other tree manipulation:
AddTip(),
CollapseNode(),
ConsensusWithout(),
DropTip(),
EnforceOutgroup(),
LeafLabelInterchange(),
MakeTreeBinary(),
RenumberTips(),
RenumberTree(),
Renumber(),
RootTree(),
SingleTaxonTree(),
SortTree()
tree <- Preorder(BalancedTree(8)) plot(tree) ape::nodelabels() ape::nodelabels(13, 13, bg='yellow') plot(Subtree(tree, 13))
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