abn internal functions
These are functions for either internal use or error checking and are not meant to be called directly by the user.
buildScoreCache.bayes(data.df=NULL, data.dists=NULL, group.var=NULL, cor.vars=NULL,
dag.banned=NULL, dag.retained=NULL, max.parents=NULL, which.nodes=NULL,
defn.res=NULL,dry.run=FALSE, max.mode.error=10, verbose=FALSE,
centre=TRUE, mean=0, prec=0.001, loggam.shape=1,
loggam.inv.scale=5e-05, max.iters=100, epsabs=1e-7, error.verbose=FALSE,
epsabs.inner=1e-6,max.iters.inner=100, finite.step.size=1e-7,
hessian.params=c(1E-04,1E-02), max.iters.hessian=10,
max.hessian.error=5E-01, factor.brent=1E+02,
maxiters.hessian.brent=100, num.intervals.brent=100,seed=9062019)
buildScoreCache.mle(data.df=NULL, data.dists=NULL, max.parents=NULL,
adj.vars=NULL, cor.vars=NULL, dag.banned=NULL, dag.retained=NULL,
which.nodes=NULL, maxit=100, tol=10^-8, centre=TRUE, defn.res=NULL,
dry.run=FALSE, verbose=FALSE,seed=9062019)
fitAbn.mle(dag=NULL, data.df=NULL, data.dists=NULL, adj.vars=NULL,
cor.vars=NULL, centre=TRUE, maxit=100, tol=10^-11, verbose=FALSE,seed=9062019)
fitAbn.bayes(dag=NULL, data.df=NULL, data.dists=NULL, group.var=NULL,
cor.vars=NULL,create.graph=FALSE,compute.fixed=FALSE, mean=0, prec=0.001,
loggam.shape=1,loggam.inv.scale=5e-05,verbose=FALSE, centre=TRUE,
max.mode.error=10, max.iters=100, epsabs=1e-7, error.verbose=FALSE,
epsabs.inner=1e-6, max.iters.inner=100, finite.step.size=1E-07,
hessian.params=c(1E-04,1E-02), max.iters.hessian=10, max.hessian.error=1E-04,
factor.brent=1E+02, maxiters.hessian.brent=10, num.intervals.brent=100,
min.pdf=1E-03,n.grid=100,std.area=TRUE,
marginal.quantiles=c(0.025,0.25,0.5,0.75,0.975),max.grid.iter=1000,
marginal.node=NULL, marginal.param=NULL,variate.vec=NULL,seed=9062019)
calc.node.inla.glm(child.loc,dag.m.loc,data.df.loc,data.dists.loc,
ntrials.loc,exposure.loc,compute.fixed.loc,
mean.intercept.loc,prec.intercept.loc,mean.loc,prec.loc,
loggam.shape.loc,loggam.inv.scale.loc,verbose.loc)
calc.node.inla.glmm(child.loc,dag.m.loc,data.df.loc,data.dists.loc,
ntrials.loc,exposure.loc,compute.fixed.loc,
mean.intercept.loc,prec.intercept.loc,mean.loc,prec.loc,
loggam.shape.loc,loggam.inv.scale.loc,verbose.loc)buildScoreCache.mle and buildScoreCache.bayes are internal functions called by buildScoreCache.
fitAbn.mle and fitAbn.bayes are internal functions called by fitAbn.
calc.node.inla.glm and calc.node.inla.glmm are internal wrappers to INLA and are called from fitAbn.bayes.
Fraser Iain Lewis, Gilles Kratzer
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