admixr: keep_transitions – R documentation

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keep_transitions

Remove transversions (C->T and G->A substitutions)

Remove substitutions that are more likely to be a result of ancient DNA damage (C->T and G->A substitutions).

keep_transitions(data, outfile = tempfile(fileext = ".snp"))

`data`	EIGENSTRAT data object.
`outfile`	Path to an output snp file with coordinates of excluded sites.

Updated S3 EIGENSTRAT data object with an additional 'exclude' slot specifying the path to the set of SNPs to be removed.

An Interface for Running 'ADMIXTOOLS' Analyses

v0.9.1

MIT + file LICENSE

Authors

Martin Petr [aut, cre] (<https://orcid.org/0000-0003-4879-8421>)

Initial release