An interface for performing all stages of 'ADMIXTOOLS' analyses
(<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions
(D, f4, f3, etc.) completely automate the generation of intermediate
configuration files, run 'ADMIXTOOLS' programs on the command-line, and
parse output files to extract values of interest. This allows users to focus
on the analysis itself instead of worrying about low-level technical details.
A set of complementary functions for processing and filtering of data in
the 'EIGENSTRAT' format is also provided.

An Interface for Running 'ADMIXTOOLS' Analyses

package-ubuntu-20.04-r-4.0.5#cran#admixr-0.9.1

<p>Write an EIGENSTRAT ind/snp/geno file.
</p>

write_ind(df, file)

write_snp(df, file)

write_geno(df, file)

<table summary="R argblock">
<tr valign="top">
<td><code>df</code></td>
<td>
<p>A data.frame object.</p>
</td>
</tr>
<tr valign="top">
<td><code>file</code></td>
<td>
<p>Path to an output file.</p>
</td>
</tr>
</table>

package-ubuntu-20.04-r-4.0.5#cran#admixr-0.9.1#docs#write_ind

write_ind

Description

Usage

Arguments

admixr

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`df`	A data.frame object.
`file`	Path to an output file.