A function to plot by group means against each other.
For a two sample comparison, as determined by group, and a
specified KEGG pathway or GO category, per group means are computed
and plotted against each other.
GOmnplot(x, eset, data = "hgu133plus2", group, ...) KEGGmnplot(x, eset, data = "hgu133plus2", group, ...)
x |
The name of the KEGG pathway or GO category. |
eset |
An |
data |
The name of the chip that was used to provide the data. |
group |
The variable indicating group membership, should have two different values. |
... |
Extra parameters to pass to the call to |
All probes in eset that map to the given category are
determined. Then per group, per probe means are computed and plotted
against each other. Extra parameters can be passed to the plot
function via the dots argument.
The matrix of per group means, for each probe.
R. Gentleman
library("hgu95av2.db")
data(sample.ExpressionSet)
KEGGmnplot("04810", sample.ExpressionSet, sample.ExpressionSet$sex,
data = "hgu95av2")Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.