Determine reference divergence
Determine reference divergence while accounting for strand flips. This does not remove ambiguous alleles.
same_ref(ref1, alt1, ref2, alt2)
ref1 |
The reference alleles of the first dataset. |
alt1 |
The alternative alleles of the first dataset. |
ref2 |
The reference alleles of the second dataset. |
alt2 |
The alternative alleles of the second dataset. |
A logical vector whether the references alleles are the same. Missing values can result from missing values in the inputs or from ambiguous matching (e.g. matching A/C and A/G).
same_ref(ref1 = c("A", "C", "T", "G", NA),
alt1 = c("C", "T", "C", "A", "A"),
ref2 = c("A", "C", "A", "A", "C"),
alt2 = c("C", "G", "G", "G", "A"))Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.