bigsnpr: download_1000G – R documentation

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download_1000G

Download 1000G

Description

Download 1000 genomes project (phase 3) data in PLINK bed/bim/fam format, including 2490 (mostly unrelated) individuals and ~1.7M SNPs in common with either HapMap3 or the UK Biobank.

Usage

download_1000G(dir, overwrite = FALSE, delete_zip = TRUE)

Arguments

`dir`	The directory where to put the downloaded files.
`overwrite`	Whether to overwrite files when downloading and unzipping? Default is `FALSE`.
`delete_zip`	Whether to delete zip after decompressing the file in it? Default is `TRUE`.

Value

The path of the downloaded bed file.

bigsnpr

Analysis of Massive SNP Arrays

v1.10.8

GPL-3

Authors

Florian Privé [aut, cre], Michael Blum [ths], Hugues Aschard [ths], Bjarni Jóhann Vilhjálmsson [ths]

Initial release

2022-07-05