bigsnpr: download_plink – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

download_plink

Download PLINK

Description

Download PLINK 1.9 from https://www.cog-genomics.org/plink2.

Download PLINK 2.0 from https://www.cog-genomics.org/plink/2.0/.

Usage

download_plink(dir = tempdir(), overwrite = FALSE, verbose = TRUE)

download_plink2(
  dir = tempdir(),
  AVX2 = TRUE,
  overwrite = FALSE,
  verbose = TRUE
)

Arguments

`dir`	The directory where to put the PLINK executable. Default is a temporary directory.
`overwrite`	Whether to overwrite file? Default is `FALSE`.
`verbose`	Whether to output details of downloading. Default is `TRUE`.
`AVX2`	Whether to download the AVX2 version? This is only available for 64 bits architectures. Default is `TRUE`.

Value

The path of the downloaded PLINK executable.

bigsnpr

Analysis of Massive SNP Arrays

v1.10.8

GPL-3

Authors

Florian Privé [aut, cre], Michael Blum [ths], Hugues Aschard [ths], Bjarni Jóhann Vilhjálmsson [ths]

Initial release

2022-07-05