Obtain A SSE Object From An SSE Sequence Vector
Inverse process of the funciton pdb2sse.
bounds.sse(x, pdb = NULL)
x |
a character vector indicating SSE for each amino acid residue. |
pdb |
an object of class |
call for its effects.
a 'sse' object.
In both $helix and $sheet, an additional
$id component is added to indicate the original numbering of the sse.
This is particularly useful in e.g. trim.pdb() function.
Xin-Qiu Yao & Barry Grant
# PDB server connection required - testing excluded
pdb <- read.pdb("1a7l")
sse <- pdb2sse(pdb)
sse.ind <- bounds.sse(sse)
sse.indPlease choose more modern alternatives, such as Google Chrome or Mozilla Firefox.