biogrowth: DynamicGrowth – R documentation

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DynamicGrowth

DynamicGrowth class

Description

The DynamicGrowth class contains the results of a growth prediction under dynamic conditions. Its constructor is predict_dynamic_growth.

A subclass of list with items:

simulation: A tibble with the model prediction
gammas: A tibble with the value of each gamma factor for each value of times.
env_conditions: A list of functions interpolating the environmental conditions.
primary_pars: A list with the model parameters of the primary model.
sec_models: A nested list defining the secondary models.

Usage

## S3 method for class 'DynamicGrowth'
plot(
  x,
  y = NULL,
  ...,
  add_factor = NULL,
  ylims = NULL,
  label_y1 = "logN",
  label_y2 = add_factor,
  line_col = "black",
  line_size = 1,
  line_type = "solid",
  line_col2 = "black",
  line_size2 = 1,
  line_type2 = "dashed"
)

Arguments

`x`	The object of class `DynamicGrowth` to plot.
`y`	ignored
`...`	additional arguments passed to `plot`.
`add_factor`	whether to plot also one environmental factor. If `NULL` (default), no environmental factor is plotted. If set to one character string that matches one entry of x$env_conditions, that condition is plotted in the secondary axis
`ylims`	A two dimensional vector with the limits of the primary y-axis.
`label_y1`	Label of the primary y-axis.
`label_y2`	Label of the secondary y-axis.
`line_col`	Aesthetic parameter to change the colour of the line geom in the plot, see: `geom_line`
`line_size`	Aesthetic parameter to change the thickness of the line geom in the plot, see: `geom_line`
`line_type`	Aesthetic parameter to change the type of the line geom in the plot, takes numbers (1-6) or strings ("solid") see: `geom_line`
`line_col2`	Same as lin_col, but for the environmental factor.
`line_size2`	Same as line_size, but for the environmental factor.
`line_type2`	Same as lin_type, but for the environmental factor.

Functions

plot.DynamicGrowth: predicted growth curve under dynamic conditions.

biogrowth

Modelling of Population Growth

v0.2.0

GPL-3

Authors

Alberto Garre [aut, cre] (<https://orcid.org/0000-0002-4404-3550>), Jeroen Koomen [aut], Heidy den Besten [aut], Marcel Zwietering [aut]

Initial release