bootnet: plotBootnetResult – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

plotBootnetResult

Plot method for bootnetResult objects

Description

Plots the graph using the qgraph package and the qgraph function. Defined as qgraph::qgraph(x[['graph']],labels=x[['labels']],...)

Usage

## S3 method for class 'bootnetResult'
plot(x, graph, weighted, signed, directed, labels, layout =
                 "spring", parallelEdge = TRUE, cut = 0, theme =
                 "colorblind", bootIncludeOverwrite = TRUE, ...)

Arguments

`x`	A `bootnetResult` object
`graph`	Numeric or string indicating which graph to plot. Only needed when multiple graphs are estimated. For example, when using `default = "graphicalVAR"`, `graph = "temporal"` plots the temporal network and `graph = "contemporaneous"` plots the contemporaneous network.
`weighted`	Logical, should the analyzed network be weighted?
`signed`	Logical, should the analyzed network be signed?
`directed`	Logical, is the analyzed network directed? Usually does not have to be set and is detected automatically.
`labels`	Labels of the nodes. Defaults to the column names of the data if missing.
`layout`	Placement of the nodes. See `qgraph`. Always defaults to `"spring"`.
`parallelEdge`	Should edges in directed networks be plotted parallel? See `qgraph`. Defaults to `TRUE` instead of `FALSE` (as in qgraph).
`cut`	Should scaling in width and saturation of edges be split? See `qgraph`. Defaults to `0` to disable cut (qgraph chooses a cutoff with at least 20 nodes).
`theme`	Theme of the edge and node colors. See `qgraph`. Defaults to `"colorblind"` rather than the default used in qgraph (`"classic"`).
`bootIncludeOverwrite`	Logical. If `TRUE`, several plot defaults are overwritten when the input is the result of `bootInclude` (e.g., edge colors are set to black and white).
`...`	Arguments sent to `qgraph`.

Author(s)

Sacha Epskamp <mail@sachaepskamp.com>

bootnet

Bootstrap Methods for Various Network Estimation Routines

v1.4.3

GPL-2

Authors

Sacha Epskamp [aut, cre], Eiko I. Fried [ctb]

Initial release