conos: collapseCellsByType – R documentation

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collapseCellsByType

Collapse count matrices by cell type, given min/max number of cells

Collapse count matrices by cell type, given min/max number of cells

collapseCellsByType(cm, groups, min.cell.count = 10, max.cell.count = Inf)

`cm`	count matrix
`groups`	factor specifying cell types
`min.cell.count`	numeric Minimum number of cells to include (default=10)
`max.cell.count`	numeric Maximum number of cells to include (default=Inf). If Inf, there is no maximum.

Subsetted factor of collapsed cells by type, with NA cells omitted

Clustering on Network of Samples

v1.4.0

GPL-3

Authors

Viktor Petukhov [aut], Nikolas Barkas [aut], Peter Kharchenko [aut], Weiliang Qiu [ctb], Evan Biederstedt [aut, cre]

Initial release