Convert Conos object to Pagoda2 object
Convert Conos object to Pagoda2 object
convertToPagoda2(con, n.pcs = 100, n.odgenes = 2000, verbose = TRUE, ...)
con |
Conos object |
n.pcs |
numeric Number of principal components (default=100) |
n.odgenes |
numeric Number of overdispersed genes (default=2000) |
verbose |
boolean Whether to give verbose output (default=TRUE) |
... |
parameters passed to Pagoda2$new() |
pagoda2 object
library(pagoda2)
panel.preprocessed <- lapply(conosPanel::panel, basicP2proc, n.cores=1, min.cells.per.gene=0,
n.odgenes=2e3, get.largevis=FALSE, make.geneknn=FALSE)
con <- Conos$new(panel.preprocessed, n.cores=1)
p2object <- convertToPagoda2(con)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.