conos: findSubcommunities – R documentation

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findSubcommunities

Increase resolution for a specific set of clusters

Increase resolution for a specific set of clusters

findSubcommunities(
  con,
  target.clusters,
  clustering = NULL,
  groups = NULL,
  method = leiden.community,
  ...
)

`con`	conos object
`target.clusters`	clusters for which the resolution should be increased
`clustering`	name of clustering in the conos object to use. Either 'clustering' or 'groups' must be provided (default=NULL).
`groups`	set of clusters to use. Ignored if 'clustering' is not NULL (default=NULL).
`method`	function, used to find communities (default=leiden.community).
`...`	additional params passed to the community function

set of clusters with increased resolution

Clustering on Network of Samples

v1.4.0

GPL-3

Authors

Viktor Petukhov [aut], Nikolas Barkas [aut], Peter Kharchenko [aut], Weiliang Qiu [ctb], Evan Biederstedt [aut, cre]

Initial release