Evaluate consistency of cluster relationships Using the clustering we are generating per-sample dendrograms and we are examining their similarity between different samples More information about similarity measures <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_cophenetic> <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_bakers_gamma>
Evaluate consistency of cluster relationships Using the clustering we are generating per-sample dendrograms and we are examining their similarity between different samples More information about similarity measures <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_cophenetic> <https://www.rdocumentation.org/packages/dendextend/versions/1.8.0/topics/cor_bakers_gamma>
getClusterRelationshipConsistency(p2list, pjc)
p2list |
list of pagoda2 object |
pjc |
a clustering factor |
list of cophenetic and bakers_gama similarities of the dendrograms from each sample
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