conos: getPercentGlobalClusters – R documentation

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getPercentGlobalClusters

Evaluate how many clusters are global

Evaluate how many clusters are global

getPercentGlobalClusters(
  p2list,
  pjc,
  pc.samples.cutoff = 0.9,
  min.cell.count.per.sample = 10
)

`p2list`	list of pagoda2 object on which clustering was generated
`pjc`	the result of joint clustering
`pc.samples.cutoff`	numeric The percent of the number of the total samples that a cluster has to span to be considered global (default=0.9)
`min.cell.count.per.samples`	numeric The minimum number of cells of cluster in sample to be considered as represented in that sample (default=10)

percent of clusters that are global given the above criteria

Clustering on Network of Samples

v1.4.0

GPL-3

Authors

Viktor Petukhov [aut], Nikolas Barkas [aut], Peter Kharchenko [aut], Weiliang Qiu [ctb], Evan Biederstedt [aut, cre]

Initial release