Plots barplots per sample of composition of each pagoda2 application based on selected clustering
Plots barplots per sample of composition of each pagoda2 application based on selected clustering
plotClusterBarplots( conos.obj = NULL, clustering = NULL, groups = NULL, sample.factor = NULL, show.entropy = TRUE, show.size = TRUE, show.composition = TRUE, legend.height = 0.2 )
conos.obj |
A conos object (default=NULL) |
clustering |
name of clustering in the current object (default=NULL) |
groups |
arbitrary grouping of cells (to use instead of the clustering) (default=NULL) |
sample.factor |
a factor describing cell membership in the samples (or some other category) (default=NULL). This will default to samples if not provided. |
show.entropy |
boolean Whether to include entropy barplot (default=TRUE) |
show.size |
boolean Whether to include size barplot (default=TRUE) |
show.composition |
boolean Whether to include composition barplot (default=TRUE) |
legend.height |
numeric Relative hight of the legend panel (default=0.2) |
a ggplot object
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