conos: plotComponentVariance – R documentation

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plotComponentVariance

Plot fraction of variance explained by the successive reduced space components (PCA, CPCA)

Requires buildGraph() or updatePairs() to be ran first with the argument score.component.variance=TRUE.

plotComponentVariance(
  conos.obj,
  space = "PCA",
  plot.theme = ggplot2::theme_bw()
)

`conos.obj`	conos object
`space`	character Reduction space to be analyzed (currently, component variance scoring is only supported by PCA and CPCA) (default='PCA')
`plot.theme`	ggplot theme (default=ggplot2::theme_bw()). Refer to <https://ggplot2.tidyverse.org/reference/ggtheme.html> for more details.

ggplot

Clustering on Network of Samples

v1.4.0

GPL-3

Authors

Viktor Petukhov [aut], Nikolas Barkas [aut], Peter Kharchenko [aut], Weiliang Qiu [ctb], Evan Biederstedt [aut, cre]

Initial release