Perform CCA (using PMA package or otherwise) on two samples
Perform CCA (using PMA package or otherwise) on two samples
quickCCA( r.n, data.type = "counts", ncomps = 100, n.odgenes = NULL, var.scale = TRUE, verbose = TRUE, PMA = FALSE, score.component.variance = FALSE )
r.n |
list of pagoda2 objects |
data.type |
character Type of data type in the input pagoda2 objects within r.n (default='counts') |
ncomps |
numeric Number of components to calculate (default=100) |
n.odgenes |
numeric Number of overdispersed genes to take from each dataset |
var.scale |
boolean Whether to scale variance (default=TRUE) |
verbose |
boolean Whether to be verbose (default=TRUE) |
score.component.variance |
boolean Whether to score component variance (default=FALSE) |
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