Use space of combined sample-specific PCAs as a space
Use space of combined sample-specific PCAs as a space
quickPlainPCA( r.n, data.type = "counts", ncomps = 30, n.odgenes = NULL, var.scale = TRUE, verbose = TRUE, score.component.variance = FALSE, n.cores = 1 )
r.n |
list of pagoda2 objects |
data.type |
character Type of data type in the input pagoda2 objects within r.n (default='counts') |
ncomps |
numeric Number of components to calculate (default=30) |
n.odgenes |
numeric Number of overdispersed genes to take from each dataset (default=NULL) |
var.scale |
boolean Whether to scale variance (default=TRUE) |
verbose |
boolean Whether to be verbose (default=TRUE) |
score.component.variance |
boolean Whether to score component variance (default=FALSE) |
n.cores |
numeric Number of cores to use (default=1) |
PCA projection, using space of combined sample-specific PCAs
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