Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/conos>. The size of the 'conosPanel' package is approximately 12 MB.

Clustering on Network of Samples

package-ubuntu-20.04-r-4.0.5#cran#conos-1.4.0

These objects are imported from other packages. Follow the links
below to see their documentation.

<dl>
<dt>leidenAlg</dt>
<dd>
<code><a href="../../leidenAlg/html/leiden.community.html">leiden.community</a></code>, <code><a href="../../leidenAlg/html/leiden.community.html">leiden.community</a></code>
</dd>
<dt>sccore</dt>
<dd>
<code><a href="../../sccore/html/embeddingPlot.html">embeddingPlot</a></code>
</dd>
</dl>

package-ubuntu-20.04-r-4.0.5#cran#conos-1.4.0#docs#reexports

reexports

Description

conos

We don't support your browser anymore