conos: stableTreeClusters – R documentation

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stableTreeClusters

Determine number of detectable clusters given a reference walktrap and a bunch of permuted walktraps

Determine number of detectable clusters given a reference walktrap and a bunch of permuted walktraps

stableTreeClusters(
  refwt,
  tests,
  min.threshold = 0.8,
  min.size = 10,
  n.cores = 30,
  average.thresholds = FALSE
)

`refwt`	reference walktrap result
`tests`	a list of permuted walktrap results
`min.threshold`	numeric Min detectability threshold (default=0.8)
`min.size`	numeric Minimum cluster size (number of leafs) (default=10)
`n.cores`	numeric Number of cores (default=30)
`average.thresholds`	boolean Report a single number of detectable clusters for averaged detected thresholds (default=FALSE) (a list of detected clusters for each element of the tests list is returned by default)

number of detectable stable clusters

Clustering on Network of Samples

v1.4.0

GPL-3

Authors

Viktor Petukhov [aut], Nikolas Barkas [aut], Peter Kharchenko [aut], Weiliang Qiu [ctb], Evan Biederstedt [aut, cre]

Initial release