convevol: multianc – R documentation

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multianc

Reconstructs ancestral states for multiple characters

Uses fastAnc to reconstruct ancestral states for multiple phenotypic characters

multianc(phyl, phendata)

`phyl`	The phylogeny of interest in phylo format
`phendata`	Phenotypic data for all tips

None

A matrix with the tips data in the first n rows and the ancestral data in the remaining n-1 rows.

Paradis, E., J. Claude, and K. Strimmer (2004) APE: Analyses of phylogenetics and evolution in R langauge. Bioinformatics, 20, 289-290.

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol. 3 217-223.

phyl<-rtree(10)

phendata<-fastBM(phyl,nsim=2)

ancs<-multianc(phyl,phendata)

Analysis of Convergent Evolution

v1.3

GPL-2

Authors

C. Tristan Stayton [aut, cre]

Initial release