Get segments on the GRanges format
The segments data frame obtained e.g. by pcf, multipcf or aspcf is converted to the GRanges format.
getGRangesFormat(segments)
GRanges, in the GenomicRanges package, is the standard BioConductor containers for range data. For some applications it may therefore be useful to convert segmentation results to this format.
The segments converted to the GRanges container class.
Gro Nilsen
#load lymphoma data data(lymphoma) #Run pcf seg <- pcf(data=lymphoma,gamma=12) #Obtain the GRanges format gr <- getGRangesFormat(seg)
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