Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

pearsonCor

Analyzes pair-wise correlation


Description

This function performs numerous pair-wise correlation analyses of genes. Within each such correlation the Pearson correlation coefficient (r) and the probability p value are calculated.

Usage

pearsonCor(expression, ctVal = TRUE)

Arguments

expression

a matrix of expression levels. Each row corresponds to a sample and each column to a gene.

ctVal

a logical value indicating data type. If ct-values are input, ctVal=TRUE, otherwise, ctVal=FALSE.

Value

A matrix of the Pearson correlation coefficient (r) and the probability p value.

References

Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP. Biotechnol Lett (2004) <doi: 10.1023/B:BILE.0000019559.84305.47>

Examples

FIBct
pearsonCor(FIBct)

ctrlGene

Assess the Stability of Candidate Housekeeping Genes

v1.0.1
GPL (>= 2)
Authors
Shanliang Zhong [aut, cre]
Initial release

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.