Get the uniques-vector from the input object.
This function extracts the uniques-vector from several different data objects,
including dada-class and derep-class objects, as well as
data.frame objects that have both $sequence and $abundance columns.
The return value is an integer vector named by sequence and valued by abundance. If the input is
already in uniques-vector format, that same vector will be returned.
getUniques(object, collapse = TRUE, silence = FALSE)
object |
(Required). The object from which to extract the |
collapse |
(Optional). Default TRUE.
Should duplicate sequences detected in |
silence |
(Optional). Default FALSE. Suppress reporting of the detection and merger of duplicated input sequences. |
integer.
An integer vector named by unique sequence and valued by abundance.
derep1 = derepFastq(system.file("extdata", "sam1F.fastq.gz", package="dada2"))
dada1 <- dada(derep1, err=tperr1)
getUniques(derep1)[1:3]
getUniques(dada1)[1:3]
getUniques(dada1$clustering)[1:3]Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.