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derepFasta

derepFasta creates a derep-class object from a fasta file, by creating a corresponding fastq file with a uniform quality score and calling derepFastq.


Description

derepFasta creates a derep-class object from a fasta file, by creating a corresponding fastq file with a uniform quality score and calling derepFastq.

Usage

derepFasta(fls, ...)

Arguments

fls

(Required). character. The file path(s) to the fasta or gzipped fasta file(s).

...

(Optional). Additional arguments passed on to derepFastq


dada2

Accurate, high-resolution sample inference from amplicon sequencing data

v1.18.0
LGPL-3
Authors
Benjamin Callahan <benjamin.j.callahan@gmail.com>, Paul McMurdie, Susan Holmes
Initial release
2020-08-07

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