The dada2 package infers exact amplicon sequence variants (ASVs) from
high-throughput amplicon sequencing data, replacing the coarser and less accurate
OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq
files, and outputs the sequence variants and their sample-wise abundances after
removing substitution and chimera errors. Taxonomic classification is available
via a native implementation of the RDP naive Bayesian classifier, and species-level
assignment to 16S rRNA gene fragments by exact matching.

Accurate, high-resolution sample inference from amplicon
sequencing data

package-ubuntu-20.04-r-4.0.5#cran#dada2-1.18.0

<table summary="R argblock"><tr valign="top">
<td><code>option</code></td>
<td>
<p>(Optional). Character.
The DADA option(s) to get.</p>
</td>
</tr></table>

<p>Named list of option/value pairs.
Returns NULL if an invalid option is requested.
</p>

<p><code><a href="setDadaOpt.html">setDadaOpt</a></code>
</p>

package-ubuntu-20.04-r-4.0.5#cran#dada2-1.18.0#docs#getDadaOpt

getDadaOpt

Description

Usage

Arguments

Value

See Also

Examples

dada2

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