Extract already computed error rates.
Extract already computed error rates.
getErrors(obj, detailed = FALSE, enforce = TRUE)
obj |
(Required). An R object with error rates. Supported objects: dada-class; list of dada-class; numeric matrix; named list with $err_out, $err_in, $trans. |
detailed |
(Optional). Default FALSE. If FALSE, an error rate matrix corresponding to $err_out is returned. If TRUE, a named list with $err_out, $err_in and $trans. $err_in and $trans can be NULL. |
enforce |
(Optional). Default TRUE. If TRUE, will check validity of $err_out and error if invalid or NULL. |
A numeric matrix of error rates. Or, if detailed=TRUE, a named list with $err_out, $err_in and $trans.
fl1 <- system.file("extdata", "sam1F.fastq.gz", package="dada2")
drp <- derepFastq(fl1)
dd <- dada(drp, err=NULL, selfConsist=TRUE)
err <- getErrors(dd)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.