dada2: makeSpeciesFasta_RDP – R documentation

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makeSpeciesFasta_RDP

This function creates the dada2 assignSpecies fasta file for the RDP from the RDP's _Bacteria_unaligned.fa file.

## RDP Trainset 16/Release 11.5 dada2:::makeSpeciesFasta_RDP("~/Desktop/RDP/current_Bacteria_unaligned.fa", "~/tax/rdp_species_assignment_16.fa.gz")

makeSpeciesFasta_RDP(fin, fout, compress = TRUE)

Accurate, high-resolution sample inference from amplicon sequencing data

v1.18.0

LGPL-3

Authors

Benjamin Callahan <benjamin.j.callahan@gmail.com>, Paul McMurdie, Susan Holmes

Initial release

2020-08-07