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makeSpeciesFasta_Silva

This function creates the dada2 assignSpecies fasta file for Silva from the SILVA_[VERSION]_SSURef_tax_silva.fasta file


Description

## Silva release v128 dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_128_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v128.fa.gz")

Usage

makeSpeciesFasta_Silva(fin, fout, compress = TRUE)

Details

## Silva release v132 dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v132.fa.gz")

Output: 313502 sequences with genus/species binomial annotation output.


dada2

Accurate, high-resolution sample inference from amplicon sequencing data

v1.18.0
LGPL-3
Authors
Benjamin Callahan <benjamin.j.callahan@gmail.com>, Paul McMurdie, Susan Holmes
Initial release
2020-08-07

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