dada2: rc – R documentation

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rc

Reverse complement DNA sequences.

Description

This function reverse complements DNA sequence(s) provided. This function is nothing more than a concisely-named convenience wrapper for reverseComplement that handles the character vector DNA sequences generated in the the dada2 package.

Usage

rc(sq)

Arguments

`sq`	(Required). `character`. The DNA sequence(s) to reverse-complement. `DNAString`, or `DNAStringSet` formats are also accepted.

Value

character. The reverse-complemented DNA sequence(s).

Examples

R1492 <- "RGYTACCTTGTTACGACTT"
rc(R1492)
sqs <- getSequences(system.file("extdata", "example_seqs.fa", package="dada2"))
rc(sqs)

dada2

Accurate, high-resolution sample inference from amplicon sequencing data

v1.18.0

LGPL-3

Authors

Benjamin Callahan <benjamin.j.callahan@gmail.com>, Paul McMurdie, Susan Holmes

Initial release

2020-08-07

rc