The dada2 package infers exact amplicon sequence variants (ASVs) from
high-throughput amplicon sequencing data, replacing the coarser and less accurate
OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq
files, and outputs the sequence variants and their sample-wise abundances after
removing substitution and chimera errors. Taxonomic classification is available
via a native implementation of the RDP naive Bayesian classifier, and species-level
assignment to 16S rRNA gene fragments by exact matching.

Accurate, high-resolution sample inference from amplicon
sequencing data

package-ubuntu-20.04-r-4.0.5#cran#dada2-1.18.0

<p>See the general documentation of <code><a href="../../methods/html/show.html">show</a></code> method for
expected behavior.
</p>

## S4 method for signature 'derep'
show(object)

## S4 method for signature 'dada'
show(object)

<table summary="R argblock"><tr valign="top">
<td><code>object</code></td>
<td>
<p>Any R object</p>
</td>
</tr></table>

package-ubuntu-20.04-r-4.0.5#cran#dada2-1.18.0#docs#show-methods

show-methods

Description

Usage

Arguments

Value

See Also

dada2

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