Merge two or more populations in a genelight {adegenet} object into one population
Individuals are assigned to populations based on the specimen metadata data file (csv) used with gl.read.dart().
gl.merge.pop(x, old = NULL, new = NULL, verbose = NULL)
x |
– name of the genlight object containing SNP genotypes [required] |
old |
– a list of populations to be merged [required] |
new |
– name of the new population [required] |
verbose |
– verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log ; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity] |
This script assigns individuals from two nominated populations into a new single population. It can also be used to rename populations.
The script returns a genlight object with the new population assignments.
A genlight object with the new population assignments
Arthur Georges (Post to https://groups.google.com/d/forum/dartr)
gl <- gl.merge.pop(testset.gl, old=c("EmsubRopeMata","EmvicVictJasp"), new="Outgroup")Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.