data.tree: ToNewick – R documentation

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ToNewick

Write a data.tree structure to Newick notation

Description

To read from Newick, you can use the ape package, and convert the resulting phylo object to a data.tree structure.

Usage

ToNewick(node, heightAttribute = DefaultPlotHeight, ...)

Arguments

`node`	The root `Node` of a tree or sub-tree to be converted
`heightAttribute`	The attribute (field name, method, or function) storing or calculating the height for each `Node`
`...`	parameters that will be passed on the the heightAttributeName, in case it is a function

Examples

data(acme)
ToNewick(acme)
ToNewick(acme, heightAttribute = NULL)
ToNewick(acme, heightAttribute = function(x) DefaultPlotHeight(x, 200))
ToNewick(acme, rootHeight = 200)

data.tree

General Purpose Hierarchical Data Structure

v1.0.0

GPL (>= 2)

Authors

Russ Hyde [ctb] (improve dependencies), Chris Hammill [ctb] (improve getting), Facundo Munoz [ctb] (improve list conversion), Markus Wamser [ctb] (fixed some typos), Pierre Formont [ctb] (additional features), Kent Russel [ctb] (documentation), Noam Ross [ctb] (fixes), Duncan Garmonsway [ctb] (fixes), Christoph Glur [aut, cre] (R interface)

Initial release

2020-07-31