Convert a phylo object from the ape package to a Node
Convert a phylo object from the ape package to a Node
## S3 method for class 'phylo' as.Node( x, heightName = "plotHeight", replaceUnderscores = TRUE, namesNotUnique = FALSE, ... )
x |
The phylo object to be converted |
heightName |
If the phylo contains edge lengths, then they will be converted to a height and stored in a field named according to this parameter (the default is "height") |
replaceUnderscores |
if TRUE (the default), then underscores in names are replaced with spaces |
namesNotUnique |
if TRUE, then the |
... |
any other parameter to be passed to sub-implementations |
Other ape phylo conversions:
GetPhyloNr(),
as.phylo.Node()
Other as.Node:
as.Node.data.frame(),
as.Node.dendrogram(),
as.Node.list(),
as.Node.rpart(),
as.Node()
#which bird familes have the max height? library(ape) data(bird.families) bf <- as.Node(bird.families) height <- bf$height t <- Traverse(bf, filterFun = function(x) x$level == 25) Get(t, "name")
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