fgsea: plotEnrichment – R documentation

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plotEnrichment

Plots GSEA enrichment plot.

Description

Plots GSEA enrichment plot.

Usage

plotEnrichment(pathway, stats, gseaParam = 1, ticksSize = 0.2)

Arguments

`pathway`	Gene set to plot.
`stats`	Gene-level statistics.
`gseaParam`	GSEA parameter.
`ticksSize`	width of vertical line corresponding to a gene (default: 0.2)

Value

ggplot object with the enrichment plot.

Examples

data(examplePathways)
data(exampleRanks)
## Not run: 
plotEnrichment(examplePathways[["5991130_Programmed_Cell_Death"]],
               exampleRanks)

## End(Not run)

fgsea

Fast Gene Set Enrichment Analysis

v1.16.0

MIT + file LICENCE

Authors

Gennady Korotkevich [aut], Vladimir Sukhov [aut], Nikolay Budin [ctb], Alexey Sergushichev [aut, cre]

Initial release